Try to remove all devices from Sources list. And re-add them one by one (use Add Existing option if you trying to add the same device that already exist in other scene). You can disable all unneeded global audio devices at Settings>Audio.
How are you checking to determine if the audio is being recorded? Do you see the volume indicators moving in the OBS mixer? If so please play the file back with a program like VLC or MPC-HC, not Windows Media Player.
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