[QUOTE="LiquidDivide, post: 222084, member: 61068"
The one audio track a get is whatever is in track 1, so in this case, I'm getting all audio mixed in track 1. If I change it so that only desktop audio is in track 1, then I only get Desktop audio in the final video..[/QUOTE]
Because you've probably only got track 1 set to record in Settings> Output > Recording.
That screen is missing from your screenshots above.
[QUOTE="LiquidDivide, post: 222084, member: 61068"
I thought I was doing this in the screenshots above. Is that not correct? If not, what do I need to do differently? I assume they are all added to the video because when I set it up this way, all audio I want to capture is in Track 1. I just can't separate the audio into separate tracks. Grouped together in track appears to be the only option I have.[/QUOTE]
You're almost there. You've actually your mic going to tracks 1 and 2 and Desktop Audio going to tracks 1 and 3. So Track 1 should have everything if in the recording tab, Track 1 is set to record. If it is set to track 2, you'd get only the mic, and if track 3 you'd get only desktop audio. The .flv recording format only records one track, while mkv and mp4 support multiple, so you could just turn them all on and sort it out in the editor, if you so chose.
Streaming only supports one track, so you have to put all your devices on it, but you can send audio sources to more than one track, so you can simultaneously stream one audio track with all your sources, but then record three additional separate tracks with various audio sources so that you can change audio levels in an editor if you wish.